STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_1619Transaldolase. (376 aa)    
Predicted Functional Partners:
RN08_1620
Transketolase.
 0.999
RN08_1053
Glucose-6-phosphate isomerase.
  
 
 0.990
RN08_0408
Fructose-bisphosphate aldolase.
  
 
 0.981
RN08_1605
Triosephosphate isomerase.
  
 0.979
RN08_3322
6-phosphofructokinase.
  
 
 0.974
RN08_1618
Glucose-6-phosphate 1-dehydrogenase.
 
 
 0.973
RN08_1234
Fructose 1,6-bisphosphatase.
    
 0.972
RN08_1603
Glyceraldehyde 3-phosphate dehydrogenase.
  
 
 0.972
RN08_2248
6-phosphofructokinase PfkB.
  
 
 0.972
RN08_2987
Polyphosphate glucokinase.
 
 
 0.946
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.