STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_1657Peptidoglycan endopeptidase RipB; Overlaps another CDS with the same product name. (206 aa)    
Predicted Functional Partners:
RN08_1655
Peptidoglycan endopeptidase RipA.
 
  
0.946
RN08_1660
Membrane protein.
     
 0.794
RN08_1755
Hypothetical protein.
  
  
0.770
RN08_1658
Transcriptional regulator MoxR1.
     
 0.725
RN08_3006
Transmembrane alanine/glycine-rich protein.
   
  
 0.721
RN08_1678
Esterase LipL.
  
 
 0.712
RN08_4315
Peptidoglycan hydrolase.
 
 
 0.698
RN08_2389
Lipid II flippase FtsW.
   
  
 0.635
RN08_2136
Lipase LipD.
  
 
 0.632
RN08_4204
Cell surface protein.
   
    0.620
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.