STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_1660Membrane protein. (335 aa)    
Predicted Functional Partners:
RN08_1659
Hypothetical protein.
 
  
 0.992
RN08_1658
Transcriptional regulator MoxR1.
 
  
 0.973
RN08_1657
Peptidoglycan endopeptidase RipB; Overlaps another CDS with the same product name.
     
 0.794
RN08_1064
Magnesium chelatase.
 
 0.737
RN08_3141
Magnesium chelatase; Overlaps another CDS with the same product name.
  
 0.696
RN08_3142
Magnesium chelatase; Overlaps another CDS with the same product name.
  
 0.696
RN08_3747
GMP synthase.
    
  0.638
RN08_3325
Hypothetical protein.
 
     0.600
RN08_2285
Cobalamin biosynthesis protein CobN.
  
 0.578
RN08_1664
Ferrochelatase.
     
 0.576
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.