STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_1664Ferrochelatase. (344 aa)    
Predicted Functional Partners:
RN08_2961
Protoporphyrinogen oxidase; Overlaps another CDS with the same product name.
 
 
 0.997
RN08_2962
Protoporphyrinogen oxidase; Overlaps another CDS with the same product name.
 
 
 0.978
RN08_2963
Uroporphyrinogen decarboxylase.
 
  
 0.976
RN08_2960
Hypothetical protein.
 
 0.975
RN08_3141
Magnesium chelatase; Overlaps another CDS with the same product name.
  
 
 0.939
RN08_0942
Oxidase.
   
 
 0.926
RN08_1064
Magnesium chelatase.
 
 
 0.925
RN08_1625
Protoheme IX farnesyltransferase.
   
 
 0.922
RN08_2081
Bacterioferritin BfrA.
     
 0.918
RN08_4239
Bacterioferritin BfrB.
    
 0.914
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.