STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_1676mRNA interferase MazF4. (105 aa)    
Predicted Functional Partners:
RN08_1675
Antitoxin MazE4.
   
 
 0.997
RN08_1677
Transport system kinase.
       0.808
RN08_1674
methylmalonyl-CoA mutase large subunit.
     
 0.783
RN08_1673
methylmalonyl-CoA mutase small subunit.
       0.775
RN08_3088
mRNA interferase MazF9.
  
   
 0.708
RN08_1238
mRNA interferase MazF3.
  
   
 0.689
RN08_2204
mRNA interferase MazF6.
  
   
 0.646
RN08_1678
Esterase LipL.
  
    0.616
RN08_2205
Antitoxin MazE6.
  
 
 0.607
RN08_3735
Transposase.
  
     0.583
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.