STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_1677Transport system kinase. (334 aa)    
Predicted Functional Partners:
RN08_1673
methylmalonyl-CoA mutase small subunit.
 
 
 0.997
RN08_1674
methylmalonyl-CoA mutase large subunit.
 
 0.996
RN08_1481
Hypothetical protein.
 
 0.942
RN08_1669
Hypothetical protein.
  
 
 0.936
RN08_1675
Antitoxin MazE4.
       0.808
RN08_1676
mRNA interferase MazF4.
       0.808
RN08_1672
TVP38/TMEM64 family membrane protein.
       0.749
RN08_1678
Esterase LipL.
       0.647
RN08_3619
propionyl-CoA carboxylase subunit beta.
 
  
 0.584
RN08_1086
Hypothetical protein.
    
 0.568
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.