STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_1684TDP-4-oxo-6-deoxy-D-glucose aminotransferase. (370 aa)    
Predicted Functional Partners:
RN08_3824
dTDP-glucose 4,6-dehydratase.
  
 
 0.982
RN08_4173
dTDP-glucose 4,6-dehydratase.
 
 
 0.961
RN08_3825
dTDP-4-dehydrorhamnose 3,5-epimerase.
  
 
 0.947
RN08_1686
Hypothetical protein.
 
  
 0.915
RN08_1687
Hypothetical protein.
 
  
 0.846
RN08_1685
Hypothetical protein.
 
   
 0.829
RN08_1946
Hypothetical protein.
  
 
 0.793
RN08_1681
Glycosyltransferase.
 
  
 0.745
RN08_3345
Acetyltransferase.
  
 
 0.717
RN08_1572
methionyl-tRNA formyltransferase.
  
 
 0.646
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
Server load: medium (60%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.