STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_1693GDP-D-mannose dehydratase GmdA. (340 aa)    
Predicted Functional Partners:
RN08_1694
Nucleotide-sugar epimerase EpiA.
 0.999
RN08_0130
GDP-mannose 4,6-dehydratase.
 
0.971
RN08_3600
D-alpha-D-mannose-1-phosphate guanylyltransferase ManB.
    
 0.944
RN08_1695
Hypothetical protein.
 
   
 0.878
RN08_3261
PGL/p-HBAD biosynthesis glycosyltransferase; Overlaps another CDS with the same product name.
 
  
 0.706
RN08_1696
Glycosyltransferase.
 
  
 0.697
RN08_0782
50S ribosomal protein L4.
      0.675
RN08_0132
D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase.
    
 0.653
RN08_0160
Oxidoreductase.
  
 0.628
RN08_0560
UDP-glucose 4-epimerase GalE.
  
 0.628
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.