STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_1702Sugar transferase. (346 aa)    
Predicted Functional Partners:
RN08_0286
Bifunctional cobinamide kinase/cobinamide phosphate guanylyltransferase.
      
 0.585
RN08_3757
Hypothetical protein.
 
 
 0.527
RN08_0376
Glucose-1-phosphate thymidylyltransferase.
 
  
 0.495
RN08_4007
UDP-glucose 4-epimerase.
 
 0.489
RN08_3260
PGL/p-HBAD biosynthesis glycosyltransferase; Overlaps another CDS with the same product name.
 
     0.474
RN08_3824
dTDP-glucose 4,6-dehydratase.
 
  
 0.470
RN08_4170
O-antigen/lipopolysaccharide ABC transporter ATP-binding protein RfbE.
 
  
 0.463
RN08_4173
dTDP-glucose 4,6-dehydratase.
 
 0.459
RN08_1572
methionyl-tRNA formyltransferase.
  
 
 0.453
RN08_0130
GDP-mannose 4,6-dehydratase.
 
 0.451
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.