STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_1727Lipoprotein signal peptidase. (202 aa)    
Predicted Functional Partners:
RN08_1728
RNA pseudouridine synthase.
  
    0.861
RN08_1787
Prolipoprotein diacylglyceryl transferase.
 
   
 0.852
RN08_2510
Apolipoprotein N-acyltransferase.
 
   
 0.802
RN08_1726
L-asparaginase.
     
 0.801
RN08_3198
Signal peptidase.
     
 0.608
RN08_3130
Ribosome-binding factor RbfA.
 
  
 0.607
RN08_1724
isoleucine--tRNA ligase.
  
  
 0.604
RN08_3218
Signal recognition particle receptor FtsY.
     
 0.600
RN08_3576
Protein translocase subunit SecA.
     
 0.594
RN08_2791
L,D-transpeptidase LdtB.
     
 0.506
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.