STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_1799Two-component system transcriptional regulator. (208 aa)    
Predicted Functional Partners:
RN08_3555
Two component sensor kinase.
 
   
 0.945
RN08_1803
30S ribosomal protein S1.
  
    0.685
RN08_4263
Glutamate synthase large subunit.
  
  
 0.626
RN08_1466
ATP synthase subunit beta.
   
  
 0.613
RN08_2486
Hypothetical protein.
   
    0.612
RN08_3138
Multifunctional uroporphyrin-III C-methyltransferase/precorrin-2 oxidase/ferrochelatase.
 
  
 0.525
RN08_1467
ATP synthase subunit epsilon.
   
    0.510
RN08_0546
Two component sensory transduction protein RegX.
  
   
 0.504
RN08_2439
Cytochrome c oxidase polypeptide 4.
   
    0.487
RN08_1160
Two component sensor histidine kinase TrcS.
  
  
 0.480
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.