STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_1806Excinuclease ABC subunit UvrB. (758 aa)    
Predicted Functional Partners:
RN08_1587
Excinuclease ABC subunit UvrC.
 0.999
RN08_1812
Excinuclease ABC subunit UvrA.
 
 0.999
RN08_1813
Excinuclease ABC subunit UvrA.
 
 0.999
RN08_2430
Hypothetical protein.
 
 0.988
RN08_1055
ATP-dependent DNA helicase UvrD.
 
 
 0.923
RN08_2874
Holliday junction ATP-dependent DNA helicase RuvA.
 
 
 0.881
RN08_2873
Holliday junction ATP-dependent DNA helicase RuvB.
 
  
 0.876
RN08_1807
Multidrug-efflux transporter.
       0.874
RN08_2875
Crossover junction endodeoxyribonuclease RuvC.
    
 0.827
RN08_1139
Transcription-repair coupling factor; Overlaps another CDS with the same product name.
    
0.807
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
Server load: medium (52%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.