STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_1871tyrosine--tRNA ligase. (421 aa)    
Predicted Functional Partners:
RN08_1826
phenylalanine--tRNA ligase subunit beta.
  
  
 0.945
RN08_0050
leucine--tRNA ligase.
 
 
 0.878
RN08_1446
arginine--tRNA ligase.
  
  
 0.869
RN08_1870
3-methyladenine DNA glycosylase.
     
 0.860
RN08_1724
isoleucine--tRNA ligase.
 
  
 0.836
RN08_2851
aspartate--tRNA ligase.
  
 
 0.824
RN08_1454
Peptide chain release factor PrfA.
 
  
 0.811
RN08_3301
glutamate--tRNA ligase.
  
 
 0.811
RN08_2716
valine--tRNA ligase.
  
  
 0.805
RN08_1127
methionine--tRNA ligase.
  
 0.794
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.