STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_187716S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA. (268 aa)    
Predicted Functional Partners:
RN08_1878
Inorganic polyphosphate/ATP-NAD kinase.
  
  
 0.983
RN08_1874
Hypothetical protein.
  
  
 0.894
RN08_1875
Phosphatase.
     
 0.892
RN08_1876
Hypothetical protein.
     
 0.892
RN08_1879
DNA repair protein RecN.
 
  
 0.890
RN08_4319
rRNA small subunit methyltransferase G.
  
   
 0.822
RN08_0007
DNA gyrase subunit A; Overlaps another CDS with the same product name.
  
  
 0.804
RN08_2263
Pyrazinamidase/nicotinamidase PncA.
     
 0.800
RN08_0005
DNA gyrase subunit B.
     
 0.797
RN08_2679
Enhanced intracellular survival protein.
      
 0.792
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
Server load: medium (66%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.