STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_1883NUDIX hydrolase. (207 aa)    
Predicted Functional Partners:
RN08_1882
CTP synthase.
  
 
 0.991
RN08_1884
Tyrosine recombinase XerD.
  
  
 0.986
RN08_3795
Bifunctional ADP-dependent (S)-NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase.
  
 0.963
RN08_1401
ATP-dependent RNA helicase DeaD.
  
 0.847
RN08_3545
ATP-dependent RNA helicase RhlE.
  
 0.847
RN08_1499
Ribonuclease PH.
    
 0.807
RN08_1881
Copper transporter MctB.
       0.749
RN08_1880
Hypothetical protein.
       0.726
RN08_3223
Ribonuclease III.
    
 0.700
RN08_3687
Isocitrate dehydrogenase.
    
  0.672
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.