STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN08_1908Hypothetical protein. (272 aa)    
Predicted Functional Partners:
RN08_1906
Hypothetical protein.
 
  
 0.964
RN08_1905
3-hydroxybutyryl-CoA dehydrogenase FadB.
 
  
 0.962
RN08_1907
Hypothetical protein.
 
    0.954
RN08_1904
Oxidoreductase.
  
 
 0.948
RN08_1909
Transcriptional regulator.
 
    0.915
RN08_1910
Hypothetical protein.
       0.750
RN08_2775
succinyl-CoA:3-ketoacid-CoA transferase subunit A.
 
  
 0.611
RN08_2774
succinyl-CoA:3-ketoacid-CoA transferase subunit B.
 
  
 0.589
RN08_0186
Hypothetical protein.
  
 
 0.529
RN08_2743
Hypothetical protein.
  
 
 0.529
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.