STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_1941ABC transporter ATP-binding protein/permease. (863 aa)    
Predicted Functional Partners:
RN08_1396
Multifunctional 2-oxoglutarate dehydrogenase E1 component /2-oxoglutarate dehydrogenase dihydrolipoyllysine-residue succinyltransferase.
   
 
 0.980
RN08_2578
Hypothetical protein.
 
  
 0.906
RN08_0019
Serine/threonine-protein kinase PknB.
  
 
 0.903
RN08_2283
Integral membrane protein.
    
 0.884
RN08_4172
O-antigen/lipopolysaccharide ABC transporter permease RfbD.
    
 0.884
RN08_1417
Hypothetical protein.
 
 
0.870
RN08_4042
Dipeptide ABC transporter substrate-binding lipoprotein DppA.
    
 0.864
RN08_1940
Serine/threonine-protein kinase PknF.
  
 
 0.863
RN08_1632
Antibiotic ABC transporter permease.
 
 
 0.854
RN08_3236
Daunorubicin ABC transporter permease DrrB.
 
 
 0.853
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.