Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN08_1963Hypothetical protein. (262 aa)    
Predicted Functional Partners:
RN08_1962
Hypothetical protein.
       0.866
RN08_1976
Hypothetical protein.
  
     0.576
RN08_4300
Alanine/proline-rich protein.
  
     0.521
RN08_2341
Integral membrane protein.
  
     0.504
RN08_1964
Hypothetical protein.
       0.503
RN08_4263
Glutamate synthase large subunit.
       0.495
RN08_0164
Transmembrane protein.
 
     0.479
RN08_3014
Integral membrane protein.
  
     0.471
RN08_0106
Membrane protein.
  
     0.461
RN08_2674
30S ribosomal protein S20.
   
    0.427
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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