Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN08_1969Hypothetical protein. (400 aa)    
Predicted Functional Partners:
RN08_1972
L-gulono-1,4-lactone dehydrogenase.
 
    0.942
RN08_1971
Hypothetical protein.
 
    0.909
RN08_0336
Trans-aconitate methyltransferase.
      
 0.658
RN08_2025
Acetolactate synthase large subunit IlvG.
 
 
  0.565
RN08_0137
oxalyl-CoA decarboxylase OxcA.
  
 
  0.484
RN08_3315
Acetolactate synthase large subunit IlvB.
  
 
  0.484
RN08_3830
Acetolactate synthase large subunit.
  
 
  0.484
RN08_3872
Acetohydroxyacid synthase large subunit.
  
 
  0.484
RN08_2036
Glycine dehydrogenase.
     
  0.480
RN08_1968
PE-PGRS family protein PE_PGRS31.
       0.473
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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