STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN08_1972L-gulono-1,4-lactone dehydrogenase. (428 aa)    
Predicted Functional Partners:
RN08_1969
Hypothetical protein.
 
    0.942
RN08_1971
Hypothetical protein.
       0.866
RN08_2433
Ubiquinol-cytochrome C reductase cytochrome subunit C.
   
 0.614
RN08_0957
DNA helicase Ercc3.
  
 
 
 0.594
RN08_1179
Oxidoreductase.
 
 
  0.586
RN08_3471
NADH-quinone oxidoreductase subunit F.
   
 0.539
RN08_3338
Electron transfer flavoprotein subunit alpha.
  
 
 0.526
RN08_1738
Acyltransferase PlsB.
    
 0.525
RN08_2747
Glycerol-3-phosphate acyltransferase.
    
 0.525
RN08_3339
Electron transfer flavoprotein subunit beta.
  
 
 0.517
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.