STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_1977Transcriptional regulator. (186 aa)    
Predicted Functional Partners:
RN08_3489
TetR family transcriptional regulator.
  
    0.815
RN08_1978
Cytochrome P450 Cyp144.
 
   
 0.804
RN08_4228
TetR family transcriptional regulator.
  
  
 0.776
RN08_0770
Mycofactocin biosynthesis transcriptional regulator MftR.
   
  
 0.770
RN08_0675
Two component DNA binding transcriptional regulator TcrA.
   
  
 0.762
RN08_3507
Transcriptional regulator.
   
    0.761
RN08_1857
HTH-type transcriptional regulator Cmr.
   
    0.756
RN08_1974
Transcriptional regulator.
   
  
 0.752
RN08_0423
HTH-type transcriptional regulator.
  
 
 0.751
RN08_2196
HTH-type transcriptional regulator.
   
 
 0.749
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.