STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_1986Ferredoxin. (67 aa)    
Predicted Functional Partners:
RN08_1985
Cytochrome P450 Cyp143.
 
  
 0.760
RN08_0459
Phosphate acetyltransferase.
    
 0.663
RN08_3371
GntR family transcriptional regulator.
  
     0.635
RN08_0159
Hypothetical protein.
  
     0.632
RN08_1995
ESX-5 type VII secretion system protein EccD.
  
     0.525
RN08_0852
Ferredoxin.
  
   
 0.512
RN08_0860
4-carboxymuconolactone decarboxylase.
 
    0.508
RN08_3894
Hypothetical protein.
 
     0.503
RN08_3861
Ferredoxin FdxD.
  
   
 0.499
RN08_2446
Hypothetical protein.
  
     0.495
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
Server load: medium (60%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.