STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN08_1995ESX-5 type VII secretion system protein EccD. (503 aa)    
Predicted Functional Partners:
RN08_1983
ESX-5 type VII secretion system protein EccB5.
  
 
 
 0.997
RN08_1984
ESX-5 type VII secretion system protein EccC5.
 
 
 
 0.997
RN08_1996
Membrane-anchored mycosin MycP.
 
 
 0.988
RN08_4290
ESX-2 type VII secretion system protein EccC.
 
 
 
 0.982
RN08_1997
Membrane-anchored mycosin MycP.
 
 
 0.974
RN08_1998
ESX-5 type VII secretion system protein EccE.
  
 
 0.967
RN08_0325
ESX-3 secretion system protein EccB3.
  
 
 
 0.940
RN08_4280
Membrane-anchored mycosin.
 
 
 0.899
RN08_0326
ESX-3 secretion system protein EccC3.
 
 
 
 0.879
RN08_1999
ESX-5 type VII secretion system protein EccA.
 
   
 0.873
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.