STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_2043Ribonuclease VapC13. (131 aa)    
Predicted Functional Partners:
RN08_2044
Antitoxin VapB13.
       0.874
RN08_0399
PPE family protein PPE8.
  
     0.636
RN08_2452
Integral membrane protein.
  
     0.630
RN08_2045
PE-PGRS family protein PE_PGRS34.
       0.622
RN08_3696
PPE family protein PPE56; Overlaps another CDS with the same product name.
  
     0.622
RN08_3692
PPE family protein PPE54.
  
     0.588
RN08_3663
Ribonuclease VapC44.
  
   
 0.587
RN08_0346
PPE family protein PPE5.
  
     0.583
RN08_0347
PPE family protein PPE5.
  
     0.574
RN08_2129
PPE family protein PPE34.
  
     0.569
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.