Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RN08_2091Chorismate mutase. (98 aa)    
Predicted Functional Partners:
RN08_4139
Prephenate dehydrogenase TyrA.
  
 
 0.990
RN08_4236
Prephenate dehydratase.
  
 
 0.985
RN08_2818
Chorismate synthase; Overlaps another CDS with the same product name.
  
 
 0.971
RN08_3549
Isochorismate synthase.
  
 
 0.949
RN08_1782
Anthranilate synthase component I.
  
 
 0.939
RN08_1054
Chorismate mutase.
     
 0.913
RN08_2092
Diacylglycerol acyltransferase/mycolyltransferase Ag85B.
  
  
 0.911
RN08_2645
Salicylate synthase.
  
 
 0.880
RN08_1125
Para-aminobenzoate synthase component I.
  
 
 0.879
RN08_0018
Anthranilate synthase component II.
  
 
 0.878
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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