Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN08_2124Oxidoreductase FadB. (439 aa)    
Predicted Functional Partners:
RN08_1841
Polyketide synthase.
 
 0.930
RN08_3231
Phthiocerol synthesis polyketide synthase type I PpsC; Overlaps another CDS with the same product name.
 
 0.922
RN08_2641
Polyketide synthetase; Overlaps another CDS with the same product name.
 
 
  0.915
RN08_4194
Polyketide synthase; Overlaps another CDS with the same product name.
 
 0.911
RN08_3249
Polyketide synthase.
 
 0.830
RN08_3233
Phthiocerol synthesis polyketide synthase type I PpsD.
 
 0.803
RN08_2269
Polyketide synthase.
  
 0.800
RN08_1845
Polyketide synthase.
 
 
  0.780
RN08_1713
Polyketide synthase; Overlaps another CDS with the same product name.
 
 0.773
RN08_3230
Phthiocerol synthesis polyketide synthase type I PpsB.
 
 0.772
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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