Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN08_2134Lipoprotein LppF. (423 aa)    
Predicted Functional Partners:
RN08_0982
Phosphoserine aminotransferase.
  
 
 0.671
RN08_1612
Hypothetical protein.
  
     0.656
RN08_1534
Lipoprotein LprF; Overlaps another CDS with the same product name.
  
     0.632
RN08_1778
Imidazole glycerol phosphate synthase subunit HisF.
  
  
 0.620
RN08_3239
Multifunctional mycocerosic acid synthase; Overlaps another CDS with the same product name.
 
 
 0.607
RN08_3974
Hypothetical protein.
  
    0.589
RN08_3306
D-3-phosphoglycerate dehydrogenase.
  
 0.583
RN08_1449
Threonine synthase.
   
 0.575
RN08_1775
Imidazole glycerol phosphate synthase subunit HisH.
  
  
 0.564
RN08_2477
Aminotransferase; Overlaps another CDS with the same product name.
 
  
 0.556
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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