STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_2134Lipoprotein LppF. (423 aa)    
Predicted Functional Partners:
RN08_1612
Hypothetical protein.
  
     0.656
RN08_0982
Phosphoserine aminotransferase.
  
 
 0.645
RN08_1534
Lipoprotein LprF; Overlaps another CDS with the same product name.
  
     0.632
RN08_3239
Multifunctional mycocerosic acid synthase; Overlaps another CDS with the same product name.
 
 
 0.631
RN08_3306
D-3-phosphoglycerate dehydrogenase.
  
 0.609
RN08_1778
Imidazole glycerol phosphate synthase subunit HisF.
  
  
 0.594
RN08_3974
Hypothetical protein.
 
    0.588
RN08_1779
phosphoribosyl-AMP cyclohydrolase.
  
  
 0.551
RN08_2185
Hypothetical protein.
 
 
   0.550
RN08_1774
Imidazole glycerol-phosphate dehydratase.
  
  
 0.549
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.