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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_2144Hypothetical protein. (174 aa)    
Predicted Functional Partners:
RN08_2146
Transcriptional regulator; Overlaps another CDS with the same product name.
 
     0.932
RN08_2145
Transcriptional regulator; Overlaps another CDS with the same product name.
 
     0.886
RN08_0620
Non-heme bromoperoxidase BpoC.
 
    0.593
RN08_0619
Muconate cycloisomerase.
       0.536
RN08_0621
Bifunctional 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase/2-oxoglutarate decarboxylase.
       0.536
RN08_0622
Transmembrane protein.
       0.536
RN08_2147
Thiol peroxidase.
       0.536
RN08_0242
Transcriptional regulator NadR.
  
    0.497
RN08_1590
Transcriptional regulator WhiA.
      
 0.491
RN08_2783
Oligoribonuclease.
     
 0.478
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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