Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN08_2152Monooxygenase. (369 aa)    
Predicted Functional Partners:
RN08_2153
Oxygenase.
 
  
 0.884
RN08_2154
Epoxide hydrolase EphB.
 
 
 0.857
RN08_3025
Epoxide hydrolase.
     
 0.843
RN08_2151
enoyl-CoA hydratase EchA13.
 
  
 0.742
RN08_2155
Oxidoreductase.
 
 
 0.728
RN08_2398
Hypothetical protein.
  
     0.679
RN08_3365
Hypothetical protein.
  
 0.623
RN08_2150
acyl-CoA dehydrogenase FadE17.
 
 
  0.612
RN08_0152
F420-dependent glucose-6-phosphate dehydrogenase.
  
     0.600
RN08_2149
acyl-CoA dehydrogenase FadE18.
 
 
  0.561
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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