Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
RN08_2155Oxidoreductase. (171 aa)    
Predicted Functional Partners:
RN08_2156
Riboflavin biosynthesis protein RibA.
  
  
 0.960
RN08_2154
Epoxide hydrolase EphB.
  
  
 0.874
RN08_2157
Short-chain type dehydrogenase/reductase.
       0.803
RN08_0350
Oxidoreductase.
 
 
 0.747
RN08_2152
Monooxygenase.
 
 
 0.728
RN08_3073
Bifunctional riboflavin kinase /FMN adenylyltransferase.
    
 0.681
RN08_3945
Extradiol dioxygenase.
  
 
 0.635
RN08_0884
Hypothetical protein.
 
 
 0.616
RN08_3516
Alanine/proline-rich protein.
 
 
 0.584
RN08_1524
Oxidoreductase.
 
 
 0.580
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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