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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_2155Oxidoreductase. (171 aa)    
Predicted Functional Partners:
RN08_2156
Riboflavin biosynthesis protein RibA.
  
  
 0.956
RN08_2154
Epoxide hydrolase EphB.
  
  
 0.869
RN08_2157
Short-chain type dehydrogenase/reductase.
       0.808
RN08_2152
Monooxygenase.
 
 
 0.767
RN08_0350
Oxidoreductase.
 
 
 0.765
RN08_3945
Extradiol dioxygenase.
  
 
 0.683
RN08_3073
Bifunctional riboflavin kinase /FMN adenylyltransferase.
   
  0.670
RN08_0884
Hypothetical protein.
 
 
 0.669
RN08_3516
Alanine/proline-rich protein.
 
 
 0.641
RN08_1524
Oxidoreductase.
 
 
 0.638
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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