Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN08_2156Riboflavin biosynthesis protein RibA. (353 aa)    
Predicted Functional Partners:
RN08_1576
Bifunctional riboflavin biosynthesis diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase.
 0.999
RN08_1583
6,7-dimethyl-8-ribityllumazine synthase.
 
 
 0.999
RN08_1579
Riboflavin synthase.
 0.998
RN08_2955
Bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase.
  
 0.965
RN08_0431
Monooxygenase.
  
  
 0.964
RN08_1582
Bifunctional riboflavin biosynthesis GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4-phosphate synthase.
 
  
0.961
RN08_2155
Oxidoreductase.
  
  
 0.960
RN08_3988
GTP cyclohydrolase I.
  
 
 0.952
RN08_0965
Molybdenum cofactor biosynthesis protein MoaA.
    
 0.906
RN08_3425
Cyclic pyranopterin monophosphate synthase 1.
  
 
  0.904
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
Server load: low (16%) [HD]