STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN08_2164Hypothetical protein. (133 aa)    
Predicted Functional Partners:
RN08_2804
Hypothetical protein.
 
 0.744
RN08_1488
ATP-dependent helicase DinG.
   
 0.725
RN08_0744
DNA-directed RNA polymerase subunit beta.
   
  0.708
RN08_3818
DNA-directed RNA polymerase subunit alpha.
    
  0.691
RN08_1802
DNA polymerase I.
  
 0.690
RN08_2178
Hypothetical protein.
 
      0.685
RN08_1556
DNA-directed RNA polymerase subunit omega.
    
 0.673
RN08_2318
5'-3' exonuclease.
   
 0.659
RN08_3837
Transmembrane protein.
  
     0.604
RN08_2330
Helicase HelZ.
   
 0.550
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.