Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN08_2169Antitoxin VapB14. (71 aa)    
Predicted Functional Partners:
RN08_2170
Ribonuclease VapC14.
   
 
 0.916
RN08_2172
Toxin HigB.
     
 0.621
RN08_2171
Hypothetical protein.
  
    0.524
RN08_2167
Hypothetical protein.
  
    0.468
RN08_2286
Antitoxin MazE7.
      
 0.465
RN08_2168
Hypothetical protein.
       0.463
RN08_1227
Pantothenate kinase.
     
  0.448
RN08_3272
Phosphopantetheine adenylyltransferase.
    
  0.448
RN08_2166
Hypothetical protein.
       0.437
RN08_2165
Hypothetical protein.
       0.435
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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