Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN08_2186Permease. (481 aa)    
Predicted Functional Partners:
RN08_2812
Cytoplasmic peptidase PepQ.
    
 0.743
RN08_1461
ATP synthase subunit C.
  
  
 0.665
RN08_0146
Trehalose synthase/amylase TreS.
   
 0.661
RN08_1486
Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase.
   
 0.661
RN08_2739
Alpha-glucosidase AglA.
   
 0.661
RN08_0757
Hypothetical protein.
      
 0.658
RN08_2576
Hypothetical protein.
  
  
 0.552
RN08_2572
Universal stress protein.
  
  
 0.532
RN08_2187
Immunogenic protein Mpt64.
  
  
 0.528
RN08_2831
Shikimate 5-dehydrogenase.
  
 0.512
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.