STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_2196HTH-type transcriptional regulator. (303 aa)    
Predicted Functional Partners:
RN08_2197
Amino-acid transporter.
 
   
 0.941
RN08_0542
Amino-acid transporter.
 
   
 0.877
RN08_4121
AraC/XylS family transcriptional regulator.
  
  
 0.815
RN08_0770
Mycofactocin biosynthesis transcriptional regulator MftR.
   
 
 0.781
RN08_3489
TetR family transcriptional regulator.
   
 
 0.775
RN08_3507
Transcriptional regulator.
   
  
 0.772
RN08_4238
Transcriptional regulator.
   
  
 0.765
RN08_3599
DNA methylase.
   
    0.762
RN08_4258
HTH-type transcriptional repressor EthR.
   
 
 0.760
RN08_2145
Transcriptional regulator; Overlaps another CDS with the same product name.
   
  
 0.757
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.