STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_2214Hypothetical protein. (480 aa)    
Predicted Functional Partners:
RN08_2215
Hypothetical protein.
  
    0.957
RN08_2216
20-beta-hydroxysteroid dehydrogenase.
  
   0.647
RN08_4006
Hypothetical protein.
 
   
 0.487
RN08_0519
Hypothetical protein.
  
    0.468
RN08_2213
Transporter.
       0.461
RN08_2540
Haloalkane dehalogenase.
  
  0.452
RN08_3819
30S ribosomal protein S4.
   
  0.423
RN08_1336
Hypothetical protein.
  
  0.416
RN08_2750
Carboxylesterase LipQ.
 
 
 0.411
RN08_3759
Dioxygenase.
 
 
 0.410
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.