Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RN08_2274Polyprenol-monophosphomannose synthase. (231 aa)    
Predicted Functional Partners:
RN08_2273
Polyprenol-monophosphomannose synthase.
   
 0.985
RN08_2272
Polyprenol-monophosphomannose synthase.
    
 0.863
RN08_2276
Transmembrane protein FxsA.
  
    0.831
RN08_2275
Hypothetical protein.
  
    0.827
RN08_0234
Transmembrane protein.
 
     0.655
RN08_4312
anti-sigma-M factor RsmA.
  
     0.605
RN08_4037
Hypothetical protein.
  
     0.598
RN08_2277
Hypothetical protein.
       0.569
RN08_1568
Primosomal protein N'.
 
   
 0.535
RN08_2418
Alpha-(1-2)-phosphatidylinositol mannoside mannosyltransferase.
  
     0.529
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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