STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_2275Hypothetical protein. (534 aa)    
Predicted Functional Partners:
RN08_2276
Transmembrane protein FxsA.
  
    0.968
RN08_2274
Polyprenol-monophosphomannose synthase.
  
    0.832
RN08_2273
Polyprenol-monophosphomannose synthase.
  
    0.831
RN08_2277
Hypothetical protein.
       0.656
RN08_1546
Hypothetical protein.
 
     0.614
RN08_2272
Polyprenol-monophosphomannose synthase.
  
    0.569
RN08_3211
Hypothetical protein.
 
     0.567
RN08_3058
Transmembrane protein.
  
     0.511
RN08_3659
Succinate dehydrogenase cytochrome B-556 subunit.
  
     0.497
RN08_3660
Succinate dehydrogenase hydrophobic membrane anchor subunit.
  
     0.487
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.