Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN08_2276Transmembrane protein FxsA. (176 aa)    
Predicted Functional Partners:
RN08_2275
Hypothetical protein.
  
  
 0.975
RN08_2273
Polyprenol-monophosphomannose synthase.
  
    0.847
RN08_2274
Polyprenol-monophosphomannose synthase.
  
    0.831
RN08_2277
Hypothetical protein.
  
    0.760
RN08_0618
Hypothetical protein.
  
  
 0.707
RN08_2995
RNA polymerase sigma factor SigB.
   
  
 0.683
RN08_1096
Serine protease PepD.
  
  
 0.627
RN08_2272
Polyprenol-monophosphomannose synthase.
  
    0.582
RN08_4008
Transmembrane protein.
 
    0.517
RN08_2050
Sensor-transducer protein BlaR.
  
  
 0.515
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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