STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_2284Hypothetical protein. (134 aa)    
Predicted Functional Partners:
RN08_2285
Cobalamin biosynthesis protein CobN.
       0.603
RN08_2460
Epimerase family protein.
  
    0.495
RN08_2461
Epimerase family protein.
  
    0.495
RN08_1747
Hypothetical protein.
  
   
 0.479
RN08_1119
Arginine deiminase.
   
    0.465
RN08_3683
Integral membrane protein; Overlaps another CDS with the same product name.
 
    0.444
RN08_0053
Oxidoreductase.
  
     0.431
RN08_2890
Membrane protein.
  
    0.428
RN08_3678
N-acetylglucosamine-6-phosphate deacetylase NagA.
 
    0.424
RN08_2576
Hypothetical protein.
  
    0.411
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.