STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_2298precorrin-6Y C(5,15)-methyltransferase; Overlaps another CDS with the same product name. (62 aa)    
Predicted Functional Partners:
RN08_2297
precorrin-6Y C(5,15)-methyltransferase; Overlaps another CDS with the same product name.
    
  0.862
RN08_2296
Precorrin-4 C(11)-methyltransferase.
       0.783
RN08_2295
precorrin-6A reductase.
    
  0.756
RN08_1837
Argininosuccinate synthase.
  
 
 0.736
RN08_1831
N-acetyl-gamma-glutamyl-phosphate reductase.
  
 
 0.699
RN08_1833
Acetylglutamate kinase.
  
 
 0.695
RN08_1806
Excinuclease ABC subunit UvrB.
    
  0.643
RN08_1835
Ornithine carbamoyltransferase.
  
 
 0.617
RN08_4263
Glutamate synthase large subunit.
     
 0.601
RN08_2299
Hypothetical protein.
       0.577
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.