STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_2317Dipeptidase PepE. (404 aa)    
Predicted Functional Partners:
RN08_2318
5'-3' exonuclease.
  
  
 0.783
RN08_2454
Aminomethyltransferase.
  
 0.639
RN08_1419
Transcriptional regulator EmbR.
  
 
 0.637
RN08_2704
Glutamine-dependent NAD(+) synthetase.
  
 
  0.630
RN08_0811
GCN5-like N-acetyltransferase.
  
 
 0.623
RN08_0775
Mycofactocin system creatinine amidohydrolase family protein MftE.
    
  0.584
RN08_0534
Amidohydrolase.
  
 
  0.550
RN08_1331
Pyrroline-5-carboxylate dehydrogenase RocA.
  
 
 0.548
RN08_1461
ATP synthase subunit C.
  
  
 0.536
RN08_0373
Dehydrogenase/reductase.
    
 0.530
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.