STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_2346Lipoprotein LppK. (189 aa)    
Predicted Functional Partners:
RN08_1802
DNA polymerase I.
  
 0.997
RN08_3526
ATP-dependent DNA helicase UvrD.
  
 0.969
RN08_3527
ATP-dependent DNA helicase UvrD.
  
 0.969
RN08_2318
5'-3' exonuclease.
  
 0.938
RN08_0067
Replicative DNA helicase.
    
 0.931
RN08_2675
Hypothetical protein.
   
 0.927
RN08_0001
Chromosomal replication initiator protein DnaA.
  
 0.910
RN08_1046
Multifunctional non-homologous end joining DNA repair protein/ATP dependent DNA ligase LigD.
   
 0.904
RN08_3373
DNA ligase.
   
 0.902
RN08_4115
DNA ligase C.
   
 0.902
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.