STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_2348tRNA (adenine(58)-N(1))-methyltransferase. (256 aa)    
Predicted Functional Partners:
RN08_0238
tRNA (guanine-N(7)-)-methyltransferase.
  
 0.927
RN08_0802
50S ribosomal protein L30.
   
   0.682
RN08_2349
Hypothetical protein.
       0.677
RN08_2974
Hypothetical protein.
   
  
 0.672
RN08_3989
Zinc metalloprotease FtsH.
   
  0.641
RN08_2297
precorrin-6Y C(5,15)-methyltransferase; Overlaps another CDS with the same product name.
    
 0.586
RN08_1556
DNA-directed RNA polymerase subunit omega.
  
    0.560
RN08_4263
Glutamate synthase large subunit.
       0.536
RN08_3998
tRNA(Ile)-lysidine synthase.
  
  
 0.530
RN08_1573
Methyltransferase.
 
  
 0.527
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.