STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_2384Laccase domain-containing protein. (267 aa)    
Predicted Functional Partners:
RN08_2383
Hypothetical protein.
  
  
 0.971
RN08_2385
Cell division protein FtsZ.
     
 0.889
RN08_2382
Cell division protein SepF.
  
  
 0.840
RN08_2388
UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol-N-acetylglucosamine transferase.
  
  
 0.797
RN08_2387
UDP-N-acetylmuramate--alanine ligase.
 
     0.785
RN08_2389
Lipid II flippase FtsW.
 
  
 0.783
RN08_2393
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase.
    
  0.738
RN08_2386
Cell division protein FtsQ.
     
 0.708
RN08_2392
phospho-N-acetylmuramoyl- pentappeptidetransferase.
 
   
 0.673
RN08_2402
Penicillin-binding membrane protein PbpB.
 
   
 0.586
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.