Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RN08_2385Cell division protein FtsZ. (379 aa)    
Predicted Functional Partners:
RN08_2382
Cell division protein SepF.
  
 
 0.990
RN08_2388
UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol-N-acetylglucosamine transferase.
 
 
 0.979
RN08_2386
Cell division protein FtsQ.
  
  
 0.916
RN08_2389
Lipid II flippase FtsW.
 
 
 0.915
RN08_2387
UDP-N-acetylmuramate--alanine ligase.
 
 
 0.914
RN08_2383
Hypothetical protein.
  
  
 0.886
RN08_2384
Laccase domain-containing protein.
     
 0.874
RN08_2394
UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase.
 
  
 0.868
RN08_3576
Protein translocase subunit SecA.
 
 
 0.861
RN08_2402
Penicillin-binding membrane protein PbpB.
 
   
 0.854
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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