STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_2391UDP-N-acetylmuramoylalanine--D-glutamate ligase; Overlaps another CDS with the same product name. (101 aa)    
Predicted Functional Partners:
RN08_2393
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase.
  
 
 0.988
RN08_2394
UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase.
  
 
 0.976
RN08_2387
UDP-N-acetylmuramate--alanine ligase.
  
 
 0.973
RN08_2390
UDP-N-acetylmuramoylalanine--D-glutamate ligase; Overlaps another CDS with the same product name.
      0.970
RN08_2388
UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol-N-acetylglucosamine transferase.
  
 
 0.955
RN08_2392
phospho-N-acetylmuramoyl- pentappeptidetransferase.
  
 
 0.954
RN08_2386
Cell division protein FtsQ.
  
  
 0.932
RN08_2389
Lipid II flippase FtsW.
  
  
 0.922
RN08_3289
D-alanine--D-alanine ligase.
  
 
 0.839
RN08_1497
Glutamate racemase.
    
 0.834
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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