STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_2404rRNA small subunit methyltransferase H. (344 aa)    
Predicted Functional Partners:
RN08_2405
Protein MraZ.
 
  
 0.984
RN08_2403
Proline-rich membrane protein.
  
  
 0.921
RN08_2402
Penicillin-binding membrane protein PbpB.
 
  
 0.845
RN08_2394
UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase.
 
  
 0.777
RN08_3804
30S ribosomal protein S9.
 
 
 
 0.773
RN08_2393
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase.
 
  
 0.745
RN08_2388
UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol-N-acetylglucosamine transferase.
  
  
 0.734
RN08_3072
30S ribosomal protein S15.
 
 
 
 0.728
RN08_2387
UDP-N-acetylmuramate--alanine ligase.
 
  
 0.716
RN08_1819
50S ribosomal protein L20.
 
    0.709
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.