STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_2415Phospho-2-dehydro-3-deoxyheptonate aldolase AroG. (462 aa)    
Predicted Functional Partners:
RN08_1054
Chorismate mutase.
   
 
 0.999
RN08_2815
3-dehydroquinate synthase.
 
  
 0.998
RN08_2091
Chorismate mutase.
   
 
 0.840
RN08_2416
3'-5' exoribonuclease.
     
 0.785
RN08_2417
Integral membrane protein.
       0.774
RN08_2418
Alpha-(1-2)-phosphatidylinositol mannoside mannosyltransferase.
       0.713
RN08_2816
Shikimate kinase.
    
 0.644
RN08_2831
Shikimate 5-dehydrogenase.
    
 0.569
RN08_2818
Chorismate synthase; Overlaps another CDS with the same product name.
     
 0.540
RN08_3564
3-phosphoshikimate 1-carboxyvinyltransferase.
     
 0.540
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
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