STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RN08_24163'-5' exoribonuclease. (168 aa)    
Predicted Functional Partners:
RN08_2417
Integral membrane protein.
       0.874
RN08_2418
Alpha-(1-2)-phosphatidylinositol mannoside mannosyltransferase.
     
 0.804
RN08_2415
Phospho-2-dehydro-3-deoxyheptonate aldolase AroG.
     
 0.785
RN08_1054
Chorismate mutase.
  
     0.773
RN08_3030
Alanine-rich protein.
  
     0.773
RN08_2735
Hypothetical protein.
  
     0.763
RN08_2434
Ubiquinol-cytochrome C reductase rieske iron-sulfur subunit; Overlaps another CDS with the same product name.
  
     0.754
RN08_4103
DNA polymerase III subunit gamma/tau; Overlaps another CDS with the same product name.
  
     0.753
RN08_3984
Secreted protein.
  
     0.748
RN08_3765
Hypothetical protein.
  
     0.729
Your Current Organism:
Mycobacterium tuberculosis variant microti
NCBI taxonomy Id: 1806
Other names: ATCC 19422, CIP 104256, M. tuberculosis variant microti, Mycobacterium microti, Mycobacterium muris, Mycobacterium tuberculosis var. muris, NCTC 8710
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.